bio-tutorial | BioPython/scikit-bio tutorial for EuroSciPy
kandi X-RAY | bio-tutorial Summary
kandi X-RAY | bio-tutorial Summary
bio-tutorial is a Jupyter Notebook library. bio-tutorial has no bugs, it has no vulnerabilities and it has low support. You can download it from GitHub.
Welcome to the BioPython/scikit-bio tutorial for EuroSciPy 2018 (Trento, Italy)! Here you’ll find setup instructions, the tutorial materials, and much more. The material is geared towards people with a beginner-to-intermediate Python background (if you can write a for-loop, a function, know what lists/dictionaries/… are, you should be fine). You don’t need a background in bio-informatics (in fact, I don’t have one): we will develop the required concepts as needed. If you have any questions, are getting stuck somewhere, or if you find any errors, please [open an issue] If you are at the conference, don’t hesitate to ask me directly. Suggestions for future topics are very welcome, as is any help with the dev-opsy part of things. In particular, the tutorial was not tested on Windows. Note that the tutorial is Python 3.
Welcome to the BioPython/scikit-bio tutorial for EuroSciPy 2018 (Trento, Italy)! Here you’ll find setup instructions, the tutorial materials, and much more. The material is geared towards people with a beginner-to-intermediate Python background (if you can write a for-loop, a function, know what lists/dictionaries/… are, you should be fine). You don’t need a background in bio-informatics (in fact, I don’t have one): we will develop the required concepts as needed. If you have any questions, are getting stuck somewhere, or if you find any errors, please [open an issue] If you are at the conference, don’t hesitate to ask me directly. Suggestions for future topics are very welcome, as is any help with the dev-opsy part of things. In particular, the tutorial was not tested on Windows. Note that the tutorial is Python 3.
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Quality
Security
License
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Support
bio-tutorial has a low active ecosystem.
It has 11 star(s) with 2 fork(s). There are 1 watchers for this library.
It had no major release in the last 6 months.
bio-tutorial has no issues reported. There are no pull requests.
It has a neutral sentiment in the developer community.
The latest version of bio-tutorial is current.
Quality
bio-tutorial has 0 bugs and 0 code smells.
Security
bio-tutorial has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
bio-tutorial code analysis shows 0 unresolved vulnerabilities.
There are 0 security hotspots that need review.
License
bio-tutorial does not have a standard license declared.
Check the repository for any license declaration and review the terms closely.
Without a license, all rights are reserved, and you cannot use the library in your applications.
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bio-tutorial releases are not available. You will need to build from source code and install.
Installation instructions, examples and code snippets are available.
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bio-tutorial Key Features
No Key Features are available at this moment for bio-tutorial.
bio-tutorial Examples and Code Snippets
No Code Snippets are available at this moment for bio-tutorial.
Community Discussions
No Community Discussions are available at this moment for bio-tutorial.Refer to stack overflow page for discussions.
Community Discussions, Code Snippets contain sources that include Stack Exchange Network
Vulnerabilities
No vulnerabilities reported
Install bio-tutorial
The tutorial is presented as a series of Jupyter notebooks that explore various pieces of BioPython and scikit-bio. The bulk of the material requires only those 3 packages, so if you have a Python 3 environment with Jupyter/BioPython/scikit-bio, you can use that. Some of the visualization apps require additional packages, those are detailed below. If you use either EDM or Conda, you can use a pre-packaged environment. Both package managers have most or all of the packages that you need.
Support
For any new features, suggestions and bugs create an issue on GitHub.
If you have any questions check and ask questions on community page Stack Overflow .
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